IHPE – CLERISSI Camille English

Camille-CIHPE UMR 5244
University of Perpignan via Domitia
52 Avenue Paul Alduy
F-66860 Perpignan Cedex FRANCE
Tel +33(0)4-68-66-17-78
Fax +33(0)4-68-66-22-81
email: camille.clerissi@univ-perp.fr
POSITION : Postdoctoral Fellow of the IFREMER
TEAM : MIMM and ECOEVI
SCIENTIFIC SOCIAL NETWORKS: ResearchGate
KEYWORDS:
Microbiology, Virology, Ecology, Evolution, Genomic, Bioinformatic, Biostatistic, Multivariate analyses.
THESIS PROJECT:
My research activities concerned two main objectives that consist to identify genes linked to phenotypes, and to study influence of environmental conditions on community structures. I am using high-throughput technologies (genomic, transcriptomic, metabarcoding), and the associated tools of bioinformatic, statistics, and multivariate approaches. Using comparative genomic and transcriptomic, I proposed candidate genes associated to (i) the host range of marine viruses (Prasinovirus), and (ii) the establishment of symbiosis between legume plants and rhizobia. I also described the diversity and distribution of Prasinovirus using metabarcoding, and highlighted environmental variables that influenced the structure of these communities.
I am now working on the specificity and the stability of microbial communities associated to the flat oyster Crassostrea gigas, in the context of the hologenome theory. This theory proposes that host and their microbiota (called the holobiont) represent the real entity under natural selection. If this theory is true for oysters, individuals that better resist to events of summer mortalities might have a high stability of their microbiota. I will test this hypothesis during my post-doctoral fellowship, and try to identify the molecular basis of oyster-microbiota interaction.
RESUME:
2016-today: Postdoctoral fellow ‘‘Specificity and stability of microbial communities associated to the oyster Crassostrea gigas’’ (University of Perpignan via Domitia)
2013-2016: Postdoctoral fellow ‘‘Omics of endosymbiosis adaptation of legume symbionts: comparison between the natural and the experimental evolution’’ (Pasteur Institute, Paris; INRA, Castanet-Tolosan)
2009-2012: PhD “Diversity and distribution of Prasinovirus (Phycodnaviridae): influence of environmental factors and evolutionary mechanisms” (University Pierre et Marie Curie, Oceanological Observatory of Banyuls-sur-Mer)
2007-2009: Master’s degree “Oceanography and marine environments” (University Pierre et Marie Curie, Paris)
2003-2007: Licence’s degree “Biology of Organisms” (University Montpellier 2)
LAST PUBLICATIONS : (before this lab)
Marchetti M, Clerissi C, Yousfi Y, Gris C, Bouchez O, Rocha EPC, Cruveiller S, Jauneau A, Capela D, Masson-Boivin C. 2016. Experimental evolution of rhizobia may lead to either extra- or intracellular symbiotic adaptation depending on the selection regime. Molecular Ecology, in press.
Clerissi C, Desdevises Y, Romac S, Audic S, de Vargas C, Acinas SG, Casotti R, Poulain J, Wincker P, Hingamp P, Ogata H, Grimsley N. 2015. Deep sequencing of amplified Prasinovirus and host green algal genes from an Indian Ocean transect reveals interacting trophic dependencies and new genotypes. Environmental Microbiology Reports, 7 (6): 979-989. doi:10.1111/1758-2229.12345.
Remigi P, Capela D, Clerissi C, Tasse L, Torchet R, Bouchez O, Batut J, Cruveiller S, Rocha EPC, Masson-Boivin C. 2014. Transient hypermutagenesis accelerates the evolution of legume endosymbionts following horizontal gene transfer. PLoS Biology, doi:10.1371/journal.pbio.1001942.
Clerissi C, Grimsley N, Subirana L, Maria E, Oriol L, Ogata H, Moreau H, Desdevises Y. 2014. Prasinovirus distribution in the Northwest Mediterranean Sea is affected by the environment and particularly by phosphate availability. Virology, doi:10.1016/j.virol.2014.07.016.
Bellec L, Clerissi C, Edern R, Foulon E, Simon N, Grimsley N, Desdevises Y. 2014. Cophylogenetic interactions between marine viruses and eukaryotic picophytoplankton. BMC Evolutionary Biology, 14: 59. doi:10.1186/1471-2148-14-59.
Clerissi C, Grimsley N, Ogata H, Hingamp P, Poulain J, Desdevises Y. 2014. Unveiling of the diversity of prasinoviruses (Phycodnaviridae) in marine samples by using high-throughput sequencing analyses of PCR-amplified DNA polymerase and Major Capsid Protein genes. Applied and Environmental Microbiology, 80(10) : 3150-3160. doi:10.1128/Aem.00123-14.
Hingamp P, Grimsley N, Acinas SG, Clerissi C, Subirana L, Poulain J, Ferrera I, Sarmento H, Villar E, Lima-Mendez G, Faust K, Sunagawa S, Claverie J-M, Moreau H, Desdevises Y, Bork P, Raes J, de Vargas C, Karsenti E, Kandels-Lewis S, Jaillon O, Not F, Pesant S, Wincker P, Ogata H. 2013. Exploring nucleo-cytoplasmic large DNA viruses in Tara Oceans microbial metagenomes. The ISME Journal, doi:10.1038/ismej.2013.59.
Clerissi C, Grimsley N, Desdevises Y. 2013. Genetic exchanges of inteins between prasinoviruses. Evolution, 67 (1): 18-33. doi:10.1111/j.1558-5646.2012.01738.x.
Clerissi C, Desdevises Y, Grimsley N. 2012. Prasinoviruses of the marine green alga Ostreococcus tauri are mainly species-specific. Journal of Virology, 86 (8): 4611. doi:10.1128/JVI.07221-11.
Karsenti E, Acinas SG, Bork P, Bowler C, de Vargas C, Raes J, Sullivan MB, Arendt D, Benzoni F, Claverie J-M, Follows M, Gorsky G, Hingamp P, Iudicone D, Jaillon O, Kandels-Lewis S, Krzic U, Not F, Ogata H, Pesant S, Reynaud EG, Sardet C, Sieracki ME, Speich S, Velayoudon D, Weissenbach J, Wincker P, and the Tara Oceans Consortium (Abergel C, Arslan D, Audic S, Aury JM, Babic N, Beaufort L, Bittner L, Boss E, Boutte C, Brum J, Carmichael M, Casotti R, Chambouvet A, Chang P, Chica C, Clerissi C, Colin S, Cornejo-Castillo FM, Da Silva C, De Monte S, Decelle J, Desdevises Y, Dimier C, Dolan J, Duhaime M, Durrieu de Madron X, d’Ortenzio F, d’Ovidio F, Ferrera I, Garczarek L, Garet-Delmas MJ, Gasmi S, Gasol JM, Grimsley N, Heilig R, Ignacio-Espinoza J, Jamet JL, Karp-Boss L, Katinka M, Khalili H, Kolber Z, Le Bescot N, Le Goff H, Lima-Mendez G, Mahé F, Mazzocchi MG, Montresor M, Morin P, Noel B, Pedrós-Alió C, Pelletier E, Perez Y, Picheral M, Piganeau G, Poirot O, Poulain J, Poulton N, Prejger F, Prihoda J, Probert I, Rampal J, Reverdin G, Romac S, Romagnan JB, Roullier F, Rouviere C, Samson G, Santini S, Sarmento H, Sciandra A, Solonenko S, Stemmann L, Subirana L, Sunagawa S, Tanaka A, Testor P, Thompson A, Tichanné-Seltzer V, Tirichine L, Toulza E, Tozzi S, Veluchamy A, Zingone A). 2011. A holistic approach to marine eco-systems biology. PLoS Biology, 9 (10):e1001177. doi:10.1371/journal.pbio.1001177.