Analyzing Eland files from Solexa sequencing

Split the alignment results into individual files for each scaffold:

Count hits on each scaffold:


Portela J, Grunau C, Cosseau C, Beltran S, Dantec C, Parrinello H and Boissier, J. Whole-genome in-silico subtractive hybridization (WISH) - using massive sequencing for the identification of unique and repetitive sex-specific sequences: the example of Schistosoma mansoni. BMC Genomics - in press.

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