Dépôts sur plateformes d’archives ouvertes


Sow M.D., Le Gac A.L., Fichot R., Lanciano S., Delaunay A., Le Jan I., Lesage-Descauses M.C., Citerne S., Caius J., Brunaud V., Soubigou-Taconnat L., Cochard H., Segura V., Chaparro C., Grunau C., Daviaud C., Tost J., Brignolas F., Strauss S.H., Mirouze ., Maury S. Hypomethylated poplars show higher tolerance to water deficit and highlight a dual role for DNA methylation in shoot meristem: regulation of stress response and genome integrity. Biorxiv (20/04/2020) 045328

Vidal-Dupiol J., Chaparro C., Pratlong M., Pontarotti P., Grunau C., Mitta G. Sequencing, de novo assembly and annotation of the genome of the scleractinian coral, Pocillopora acuta. Biorxiv (19/04/2020) 698688

The Holomarine Working Group (S.M. Dittami, E. Arboleda, J.C. Auguet, A. Bigalke, E. Briand, P. Cardenas, U. Cardini, J. Decelle, A.H. Engelen, D. Eveillard, C.M.M. Gachon, S.M.
Griffiths, T. Harder, E. Kayal, E. Kazamia, F.H. Lallier, M. Medina, E.M. Marzinelli, T. Morganti, L. Núñez Pons, S. Prado, J. Pintado Valverde, M. Saha, M.A. Selosse, D. Skillings, W. Stock, S. Sunagawa, E. Toulza, A. Vorobev, C. Leblanc, F. Not). A community perspective on the concept of marine holobionths: current status, challenges, and future directions. (26/02/2020) Peer J Preprintsreviewed and recommanded by PCI Ecology

Destoumieux-Garzon D., Bonnet P., Teplitsky C., Criscuolo F., Henry P.Y., Mazurais D., Prunet P., Salvat G., Usseglio-Polatera P., Verrier E., Friggens N. OneARK: strengthening the links between animal production science and animal ecology. Zenodo 3632732 31/01/2020 + recommanded by PCI Animal Sciences + Accepted aug 2020 Animal (International Journal of Animal Biosciences)


De Carvalho Augusto R., Minoda A., Grunau C. A simple ATAC-seq protocol for population epigenetics. Protocols.io (12/12/2019) bae6ibhe

De Carvalho Augusto, R., Minoda, A., Rey, O., Cosseau, C., Chaparro, C., Vidal-Dupiol, J., Allienne, J.F., Duval, D., Pinaud, S., Tönges, S., Andriantsoa, R., Luquet, E., Aubret, F., Dia sow, M., David, P., Thomson, V., Federico, D., Joly, D., Gomes Lima, M., Danchin, E., Grunau, C. Chromatin structure changes in Daphnia populations upon exposure to environmental cues – or – the discovery of Wolterecks “Matrix”. BioRxiv (30/10/2019) 824789

Brener-Raffali K., Vidal-Dupiol J., Adjeroud M., Rey O., Romans P., Bonhomme F., Pratlong M., Haguenauer A., Pillot R., Feuillassier L., Claereboudt M., Magalon H., Gélin P., Pontarotti P., Aurelle D., Mitta G., Toulza E. Gene expression plasticity and frontloading promote thermotolerance in Pocilloporid corals. BioRxiv (v4 04/09/2019) : 398602  v4 peer-reviewed and recommanded by PCI Ecology

Chevalier, F.D., Le Clec’h, W., McDew-White, M., Menon, V., Guzman, M.A., Holloway, S.P., Cao, X., Taylor, A.B., Kinung’hi, S., Gouvras, A.N., Webster, B.L., Webster, J.P., Emery, A.M., Rollinson, D., Garba Djirmay, A., Al Mashikhi, K.M., Al Yafae, S., Idris, M.A., Moné, H., Mouahid, G., Hart, J., LoVerde, P.T., Anderson, T.J.C. Oxamniquine resistance alleles are widespread in Old World Schistosoma mansoni and predate drug deployment. BioRxiv (20/08/2019) 657056 ; publiée dans PLOS Pathogens

Roquis D., Picart-Picolo A., Brener-Raffalli K., Romans P., Masanet P., Cosseau C., Mitta G., Grunau C., Vidal-Dupiol J. The tropical coral Pocillopora acuta has a mosaic DNA methylone, an unusual chromatin structure and shows histone H3 clipping. BioRxiv (01/08/2019) : 722322v1

Brahmi C., Chapron L., Le Moullac G., Soyez C., Beliaeff B., Lazareth C., Gaertner-Mazouni N., Vidal-Dupiol J. Effects of temperature and pCO2 on the respiration, biomineralization and photophysiology of the giant clam Tridacna maxima. BioRxiv (18/06/2019) : 672907

Ali Birmani N.,Naz S., Mouahid G. First record of Echinoparyphium recurvatum (Trematoda, Echinostomatidae) in Pakistan with new avian definitive host, Vanellus leucurus. Arxiv.org (12/03/2019) 1903.04795 publié dans Archives on Veterinary Science and Technology

Portet A., Pinaud S., Chaparro C., Galinier R., Dheilly N.M., Portela J., Charrière G.M., Allienne J.F., Duval D., Gourbal B. Sympatric versus allopatric evolutionary contexts shape differential immune response in Biomphalaria / Schistosoma interaction. BioRxiv (15/03/2019) :


Alves Monteiro H.J., Brahmi C., Mayfield A.B., Vidal-Dupiol J., Lapeyre B., Le Luyer J. Identifying conserved molecular mechanisms of thermo-acclimation in symbiotic organisms. BioRxiv (10/12/2018) 492702

Luviano N., Diaz-Palma S., Cosseau C., Grunau C. A simple dot blot assay for population scale screaning of DNA methylation. BioRviv (06/11/2018) :

Robino E.*, Poirier A.C.*, Lopez-Joven C., Auguet J.-C., Rubio T.P., Groult T., Rolland J.-L., Hechard Y., Destoumieux-Garzon D., Charriere G.M. Microbial predator-prey interactions could favor coincidental selection of diverse virulence factos in marine coastal waters. BioRxiv (19/10/2018) : 439018

Brener-Raffalli K., Vidal-Dupiol J., Adjeroud M. Rey O. (…) Mitta G., Toulza E. Gene expression plasticity and frontloading promote thermotolerance in Pocilloporid corals. BioRxiv (23/08/2018) : 398602 v1

Kincaid-Smith J. (..) Bulla I. (…) Rognon A., Rey O., Chaparro C. (…) Allienne J.F., Grunau C. (…) Boissier J., Toulza E. Whole genome sequencing and morphological analysis of the human-infecting schistosome emerging in Europe reveals a complex admixture between Schistosoma haematobium and Schistosoma bovis parasites. BioRxiv (11/08/2018) : 387969

Portet A., Toulza E., Lokmer A., Huot C., Duval D., Galinier R., Gourbal B. Dysbiosis of the Biomphalaria glabrata vector snail microbiota following infection by Schistosoma parasites. BioRxiv (07/08/2018) : 386623

Clerissi C., de Lorgeril J., Petton B., Lucasson A., Escoubas J.M., Gueguen Y., Mitta G., Toulza E. Diversity and stability of microbiota are key factors associated to healthy and diseased Crassostrea gigas oysters. BioRxiv (26/07/2018) : 378125

Portet A., Galinier R., Pinaud S., Portela J., Nowacki F., Gourbal B., Duval D. BgTEP : an antiprotease involved in innate immune sensing in Biomphalaria glabrata. BioRxiv (25/04/2018) :

Pratlong M., Haguenauer A., Brener K., Mitta G., Toulza E., Garrabou J., Bensoussan N., Pontarotti P., Aurelle D. Separate the wheat from the chaff: genomic analysis of local adaptation in the red coral Corallium rubrum. BioRxiv (23/04/2018) : 306456 recommanded by PCI Ecology


Bulla I., Aliaga B., Lacal V., Bulla J., Grunau C., Chaparro C. Notos – a Galaxy tool to analyze CpN observed expected ratios for inferring DNA methylation types. BioRxiv (25/08/2017) : publié dans BMC Bioinformatics