IHPE – VIDAL-DUPIOL Jérémie

IHPE UMR 5244
Université de Montpellier
Place Eugène Bataillon CC 80
F-34095 Montpellier Cedex 5
Tel +33(0)4-67-14-36-84
Fax +33(0)4-67-14-46-22
email: Jeremie.Vidal.Dupiol@ifremer.fr

GRADE : Chargé de Recherche Ifremer
EQUIPE : MIA
ENCADREMENT DE THESE :
LUGUE Klervi, BUSO Pauline
RESPONSABILITES :
Co-Responsable de l’équipe MIA
Co-Organisateur du congrès international EPIMAR2020

RESEAUX SOCIAUX SCIENTIFIQUES :

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DOMAINE D’EXPERTISE-RECHERCHE :
Pour de très nombreuses populations d’organismes, l’aire anthropocène est synonyme de perturbations croissantes et diversifiées conduisant à la nécessité d’une adaptation rapide à ces changements. Ces changements peuvent être de divers ordres et impliquer des modifications environnementales biotiques, telle que l’émergence de pathogène, ou abiotiques telle que l’augmentation des températures.

C’est à l’étude et la compréhension de ces mécanismes d’adaptation rapides que je m’intéresse, et ceci au travers de deux modèles d’étude : i) les coraux constructeurs de récifs confrontés au réchauffement climatique, et ii) les huitres creuses du pacifique à l’émergence de pathogènes. Dans ces deux cas de figure, les pressions de sélection fortes et soudaines qui sont exercées vont favoriser la mise en œuvre de mécanismes d’adaptation rapides (temps écologique).

Afin d’appréhender ces mécanismes je développe des approches expérimentales aussi bien en milieu contrôlé qu’en milieu naturel à des échelles spatiales (des molécules aux populations) et temporelles (du stade de vie au transgénérationnel) différentes. Par la suite, j’étudie les réponses des populations et organismes par des approches d’omics intégratives et pluridisciplinaires inspirées de la biologie des systèmes appréhendant notamment le triptyque génome, épigénome, phénome et leurs interactions avec l’environnement.

L’objectif finalisé de ma recherche est de transformer cette compréhension des mécanismes d’adaptation rapides en des outils de gestion des changements en cours que ce soit dans un contexte d’aquaculture ou de protection et de restauration des écosystèmes.

PUBLICATIONS :



101 documents

Articles dans une revue

  • Cécile Blanchon, Eve Toulza, Christophe Calvayrac, Stanislawa Eichendorff, Marie-Agnes Travers, et al.. Inactivation of two oyster pathogens by photocatalysis and monitoring of changes in the microbiota of seawater: a case study on Ostreid Herpes Virus 1 µVar and Vibrio harveyi. Chemosphere, 2024, 346, pp.140565. ⟨hal-04305291⟩
  • Luc Dantan, Eve Toulza, Bruno Petton, C. Montagnani, Lionel Dégremont, et al.. Microbial education for marine invertebrate disease prevention in aquaculture. Reviews in Aquaculture, In press, ⟨10.1111/raq.12893⟩. ⟨hal-04470074⟩
  • Erika A.V. Burioli, Maurine Hammel, Emmanuel Vignal, Jeremie Vidal-Dupiol, Guillaume Mitta, et al.. Transcriptomics of mussel transmissible cancer MtrBTN2 suggests accumulation of multiple cancer traits and oncogenic pathways shared among bilaterians. Open Biology, 2023, 13 (10), pp.230259. ⟨10.1098/rsob.230259⟩. ⟨hal-04245345⟩
  • Janan Gawra, Alejandro Valdivieso, Fabrice Roux, Martin Laporte, Julien de Lorgeril, et al.. Epigenetic variations are more substantial than genetic variations in rapid adaptation of oyster to Pacific oyster mortality syndrome. Science Advances , 2023, 9 (36), pp.eadh899. ⟨10.1126/sciadv.adh8990⟩. ⟨hal-04202595⟩
  • Daniel Oyanedel, Arnaud Lagorce, Maxime Bruto, Philippe Haffner, Amandine Morot, et al.. Cooperation and cheating orchestrate Vibrio assemblages and polymicrobial synergy in oysters infected with OsHV-1 virus. Proceedings of the National Academy of Sciences of the United States of America, 2023, 120 (40), pp.e2305195120. ⟨10.1073/pnas.2305195120⟩. ⟨hal-04219877⟩
  • Hamadou Dicko, Tilman Grünewald, Patrick Ferrand, Jérémie Vidal-Dupiol, Vaihiti Teaniniuraitemoana, et al.. Sub-micrometric spatial distribution of amorphous and crystalline carbonates in biogenic crystals using coherent Raman microscopy. Journal of Structural Biology, 2022, 214 (4), pp.107909. ⟨10.1016/j.jsb.2022.107909⟩. ⟨hal-03852411⟩
  • Tilman A Grünewald, Stefano Checchia, Hamadou Dicko, Gilles Le Moullac, Manaarii Sham Koua, et al.. Structure of an amorphous calcium carbonate phase involved in the formation of Pinctada margaritifera shells. Proceedings of the National Academy of Sciences of the United States of America, 2022, 119 (45), ⟨10.1073/pnas.2212616119⟩. ⟨hal-03846165⟩
  • Didier Aurelle, Marine Pratlong, Nicolas Oury, Anne Haguenauer, Pauline Gélin, et al.. Species and population genomic differentiation in Pocillopora corals (Cnidaria, Hexacorallia). Genetica, 2022, 150, pp.247-262. ⟨10.1007/s10709-022-00165-7⟩. ⟨hal-03774130⟩
  • Jeremie Vidal-Dupiol, Erwan Harscouet, Dor Shefy, Eve Toulza, Olivier Rey, et al.. Frontloading of stress response genes enhances robustness to environmental change in chimeric corals. BMC Biology, 2022, 20, pp.167. ⟨10.1186/s12915-022-01371-7⟩. ⟨hal-03738334⟩
  • Manon Fallet, C. Montagnani, Bruno Petton, Luc Dantan, Julien de Lorgeril, et al.. Early life microbial exposures shape the Crassostrea gigas immune system for lifelong and intergenerational disease protection. Microbiome, 2022, 10, pp.85. ⟨10.1186/s40168-022-01280-5⟩. ⟨hal-03635473v2⟩
  • Julien Duboisset, Patrick Ferrand, Arthur Baroni, Tilman Grünewald, Hamadou Dicko, et al.. Amorphous-to-crystal transition in the layer-by-layer growth of bivalve shell prisms. Acta Biomaterialia, 2022, 142, pp.194-207. ⟨10.1016/j.actbio.2022.01.024⟩. ⟨hal-03527747⟩
  • K. Brener-Raffalli, Jeremie Vidal-Dupiol, M. Adjeroud, Olivier REY, P. Romans, et al.. Gene expression plasticity and frontloading promote thermotolerance in Pocillopora corals. Peer Community Journal, 2022, 2, pp.e13. ⟨10.24072/pcjournal.79⟩. ⟨hal-03239787⟩
  • David Roquis, Celine Cosseau, Kelly Brener Raffalli, Pascal Romans, Patrick Masanet, et al.. The tropical coral Pocillopora acuta displays an unusual chromatin structure and shows histone H3 clipping plasticity upon bleaching. Wellcome Open Research, 2022, 6, pp.195. ⟨10.12688/wellcomeopenres.17058.2⟩. ⟨hal-03315093v2⟩
  • Pierre‐louis Stenger, Chin‐Long Ky, Jeremie Vidal-Dupiol, Serge Planes, Céline Reisser. Identifying genes associated with genetic control of color polymorphism in the pearl oyster Pinctada margaritifera var. cumingii (Linnaeus 1758) using a comparative whole genome pool‐sequencing approach. Evolutionary Applications, 2022, ⟨10.1111/eva.13464⟩. ⟨hal-03768944⟩
  • Ronaldo de Carvalho Augusto, Olivier REY, Céline Cosseau, Cristian Chaparro, Jeremie Vidal-Dupiol, et al.. A simple ATAC-seq protocol for population epigenetics. Wellcome Open Research, 2021, 5, pp.121. ⟨10.12688/wellcomeopenres.15552.2⟩. ⟨hal-03145575v2⟩
  • David Roquis, Céline Cosseau, Kelly Brener Raffalli, Pascal Romans, Patrick Masanet, et al.. The tropical coral Pocillopora acuta displays an unusual chromatin structure and shows histone H3 clipping plasticity upon bleaching. Wellcome Open Research, 2021, 6, 195 (11p.). ⟨10.12688/wellcomeopenres.17058.1⟩. ⟨hal-04203564⟩
  • Chloé Brahmi, Leila Chapron, Gilles Le Moullac, Claude Soyez, Benoît Beliaeff, et al.. Effects of elevated temperature and p CO2 on the respiration, biomineralization and photophysiology of the giant clam Tridacna maxima. Conservation Physiology, 2021, 9 (1), pp.coab041. ⟨10.1093/conphys/coab041⟩. ⟨hal-03265586⟩
  • Pierre-Louis Stenger, Chin-Long Ky, Céline Reisser, Julien Duboisset, Hamadou Dicko, et al.. Molecular Pathways and Pigments Underlying the Colors of the Pearl Oyster Pinctada margaritifera var. cumingii (Linnaeus 1758). Genes, 2021, 12 (3), pp.421. ⟨10.3390/genes12030421⟩. ⟨hal-03178866⟩
  • Pierre-Louis Stenger, Chin-Long Ky, Céline M O Reisser, Céline Cosseau, Christoph Grunau, et al.. Environmentally Driven Color Variation in the Pearl Oyster Pinctada margaritifera var. cumingii (Linnaeus, 1758) Is Associated With Differential Methylation of CpGs in Pigment- and Biomineralization-Related Genes. Frontiers in Genetics, 2021, 12, pp.630290. ⟨10.3389/fgene.2021.630290⟩. ⟨hal-03178846⟩
  • Lizenn Delisle, Marianna Pauletto, Jeremie Vidal-Dupiol, Bruno Petton, Luca Bargelloni, et al.. High temperature induces transcriptomic changes in Crassostrea gigas that hinder progress of ostreid herpesvirus (OsHV-1) and promote survival. Journal of Experimental Biology, 2020, 223, pp.jeb226233. ⟨10.1242/jeb.226233⟩. ⟨hal-03049914⟩
  • Jean Delmotte, Cristian Chaparro, Richard Galinier, Julien de Lorgeril, Bruno Petton, et al.. Contribution of Viral Genomic Diversity to Oyster Susceptibility in the Pacific Oyster Mortality Syndrome. Frontiers in Microbiology, 2020, 11, pp.1579. ⟨10.3389/fmicb.2020.01579⟩. ⟨hal-02915023⟩
  • Maxime Lafont, Agnès Vergnes, Jeremie Vidal-Dupiol, Julien de Lorgeril, Yannick Guéguen, et al.. A Sustained Immune Response Supports Long-Term Antiviral Immune Priming in the Pacific Oyster, Crassostrea gigas. mBio, 2020, ⟨10.1128/mBio.02777-19⟩. ⟨hal-02527469⟩
  • Julien de Lorgeril, Bruno Petton, Aude Lucasson, Valérie Perez, Pierre-Louis Stenger, et al.. Differential basal expression of immune genes confers Crassostrea gigas resistance to Pacific Oyster Mortality Syndrome. BMC Genomics, 2020, 21 (1), pp.63. ⟨10.1186/s12864-020-6471-x⟩. ⟨hal-02432454⟩
  • Rael Horwitz, Tommy Norin, Sue-Ann Watson, Jennifer C.A. Pistevos, Ricardo Beldade, et al.. Near-future ocean warming and acidification alter foraging behaviour, locomotion, and metabolic rate in a keystone marine mollusc. Scientific Reports, 2020, 10 (1), pp.5461. ⟨10.1038/s41598-020-62304-4⟩. ⟨hal-02929045⟩
  • H.J. Alves Monteiro, C. Brahmi, A.B. Mayfield, J. Vidal-Dupiol, B. Lapeyre, et al.. Molecular mechanisms of acclimation to long‐term elevated temperature exposure in marine symbioses. Global Change Biology, 2020, 26 (3), pp.1271-1284. ⟨10.1111/GCB.14907⟩. ⟨hal-02392459⟩
  • Pierre-Louis Stenger, Jeremie Vidal-Dupiol, Céline Reisser, Serge Planes, Chin-Long Ky. Colour plasticity in the shells and pearls of animal graft model Pinctada margaritifera assessed by HSV colour quantification. Scientific Reports, 2019, 9, pp.7520. ⟨10.1038/s41598-019-43777-4⟩. ⟨hal-02146170⟩
  • Tristan Rubio, Daniel Oyanedel, Yannick Labreuche, Eve Toulza, Xing Luo, et al.. Species-specific mechanisms of cytotoxicity toward immune cells determine the successful outcome of Vibrio infections. Proceedings of the National Academy of Sciences of the United States of America, 2019, 116 (28), pp.14238-14247. ⟨10.1073/pnas.1905747116⟩. ⟨hal-02163271⟩
  • J. Le Luyer, P. Auffret, V. Quillien, N. Leclerc, C. Reisser, et al.. Whole transcriptome sequencing and biomineralization gene architecture associated with cultured pearl quality traits in the pearl oyster, Pinctada margaritifera. BMC Genomics, 2019, 20, pp.111. ⟨10.1186/s12864-019-5443-5⟩. ⟨hal-02015147⟩
  • Camille Clerissi, Sébastien Brunet, Jeremie Vidal-Dupiol, Mehdi Adjeroud, Pierre Lepage, et al.. Protists Within Corals: The Hidden Diversity. Frontiers in Microbiology, 2018, 9, pp.2043. ⟨10.3389/fmicb.2018.02043⟩. ⟨hal-01887637⟩
  • Julien de Lorgeril, Aude Lucasson, Bruno Petton, Eve Toulza, Caroline Montagnani, et al.. Immune-suppression by OsHV-1 viral infection causes fatal bacteraemia in Pacific oysters. Nature Communications, 2018, 9 (1), pp.4215. ⟨10.1038/s41467-018-06659-3⟩. ⟨hal-01898110⟩
  • Kelly Brener-Raffalli, Camille Clerissi, Jeremie Vidal-Dupiol, Mehdi Adjeroud, François Bonhomme, et al.. Thermal regime and host clade, rather than geography, drive Symbiodinium and bacterial assemblages in the scleractinian coral Pocillopora damicornis sensu lato. Microbiome, 2018, 6, pp.39. ⟨10.1186/s40168-018-0423-6⟩. ⟨hal-01729372⟩
  • Gergely Torda, Jennifer M. Donelson, Manuel Aranda, Daniel J. Barshis, Line Bay, et al.. Rapid adaptive responses to climate change in corals. Nature Climate Change, 2017, 7 (9), pp.627 - 636. ⟨10.1038/NCLIMATE3374⟩. ⟨hal-01598493⟩
  • Delphine Destoumieux-Garzón, R. D. Rosa, P. Schmitt, C. Barreto, Jeremie Vidal-Dupiol, et al.. Antimicrobial peptides in marine invertebrate health and disease. Philosophical Transactions of the Royal Society B: Biological Sciences, 2016, 371 (1695), pii: 20150300. ⟨10.1098/rstb.2015.0300⟩. ⟨hal-01316402⟩
  • Gilles Le Moullac, Caroline Soyer, Jeremie Vidal-Dupiol, Corinne Belliard, J. Fievet, et al.. Impact of pCO2 on the energy, reproduction and growth of the shell of the pearl oyster Pinctada margaritifera. Estuarine, Coastal and Shelf Science, 2016, 182 (Part B), pp.274-282. ⟨10.1016/j.ecss.2016.03.011⟩. ⟨hal-01434187⟩
  • Gilles Le Moullac, Claude Soyez, Oihana Latchere, Jeremie Vidal-Dupiol, Juliette Fremery, et al.. Pinctada margaritifera responses to temperature and pH: Acclimation capabilities and physiological limits. Estuarine, Coastal and Shelf Science, 2016, 182 (Part B), pp.261-269. ⟨10.1016/j.ecss.2016.04.011⟩. ⟨hal-01434318⟩
  • Jeremie Vidal-Dupiol, Nolwenn M. Dheilly, Rodolfo Rondon, Christoph Grunau, Celine Cosseau, et al.. Thermal Stress Triggers Broad Pocillopora damicornis Transcriptomic Remodeling, while Vibrio coralliilyticus Infection Induces a More Targeted Immuno-Suppression Response. PLoS ONE, 2014, 9 (9), pp.e107672. ⟨10.1371/journal.pone⟩. ⟨hal-01112610⟩
  • Mehdi Adjeroud, Aurélie Guérécheau, Jeremie Vidal-Dupiol, Jean-François Flot, Sophie Arnaud-Haond, et al.. Genetic diversity, clonality and connectivity in the scleractinian coral Pocillopora damicornis: a multi-scale analysis in an insular, fragmented reef system. Marine Biology, 2013, 161 (3), pp.531-541. ⟨10.1007/s00227-013-2355-9⟩. ⟨halsde-01007685⟩
  • Jeremie Vidal-Dupiol, Didier Zoccola, Eric Tambutté, Christoph Grunau, Céline Cosseau, et al.. Genes related to ion-transport and energy production are upregulated in response to CO2-Driven pH decrease in corals: new insights from transcriptome analysis. PLoS ONE, 2013, 8 (3), pp.e58652. ⟨halsde-00805879⟩
  • Jeremie Vidal-Dupiol, Didier Zoccola, Sylvie Tambutté, Eric Tambutté, Christoph Grunau, et al.. Genes Related to Ion-Transport and Energy Production Are Upregulated in Response to CO2-Driven pH Decrease in Corals: New Insights from Transcriptome Analysis. PLoS ONE, 2013, 8 (3), pp.e58652. ⟨10.1371/journal.pone.0058652⟩. ⟨hal-03779125⟩
  • Ophélie Ladrière, Lucie Penin, Elodie van Lierde, Jeremie Vidal-Dupiol, Mohsen Kayal, et al.. Natural spatial variability of algal endosymbiont density in the coral Acropora globiceps: a small-scale approach along environmental gradients around Moorea (French Polynesia). Journal of the Marine Biological Association of the UK, 2013, pp.1-10. ⟨10.1017/S0025315413001252⟩. ⟨hal-00905942⟩
  • Lucie Penin, Jeremie Vidal-Dupiol, Mehdi Adjeroud. Response of coral assemblages to thermal stress: Are spatial and taxonomic patterns in bleaching consistent between events?. Environmental Monitoring and Assessment, 2013, 185, pp.5031-5042. ⟨10.1007/s10661-012-2923-3⟩. ⟨hal-00905944⟩
  • Jeremie Vidal-Dupiol, Ophélie Ladrière, Delphine Destoumieux-Garzón, Pierre-Eric Sautière, Anne-Leila Meistertzheim, et al.. Innate immune responses of a scleractinian coral to vibriosis.. Journal of Biological Chemistry, 2011, 286 (25), pp.22688-98. ⟨10.1074/jbc.M110.216358⟩. ⟨halsde-00608446⟩
  • Jeremie Vidal-Dupiol, Ophélie Ladrière, Anne-Leila Meistertzheim, Laurent Fouré, Mehdi Adjeroud, et al.. Physiological responses of the scleractinian coral Pocillopora damicornis to bacterial stress from Vibrio corallilyticus. Journal of Experimental Biology, 2011, 214 (9), pp.1533-1545. ⟨10.1242/jeb.053165⟩. ⟨halsde-00582731⟩
  • Jeremie Vidal-Dupiol, Mehdi Adjeroud, Emmanuel Roger, Laurent Foure, David Duval, et al.. Coral bleaching under thermal stress: putative involvement of host/symbiont recognition mechanisms.. BMC Physiology, 2009, 9, pp.14. ⟨10.1186/1472-6793-9-14⟩. ⟨halsde-00431331⟩
  • Mehdi Adjeroud, F. Michonneau, P.J. Edmunds, Y. Chancerelle, T. Lison de Loma, et al.. Reccurent disturbances, recovery trajectories, and resilience of coral assemblages on a South Central Pacific reef. Coral Reefs, 2009, 28, pp.775-780. ⟨10.1007/s00338-009-0515-7⟩. ⟨halsde-00431338⟩

Communications dans un congrès

  • Virginie Chamard, Tilman A. Grünewald, Hamadou Dicko, Jeremie Vidal-Dupiol, Bruno Petton, et al.. Towards in vivo imaging of the physico-chemistry processes involved in the biomineralization of mollusc shells. 17th International Symposium on Biomineralization (BIOMIN XVII), Aug 2023, Saint-Etienne, France. ⟨hal-04195201⟩
  • Jeremie Vidal-Dupiol, Erwan Harscouet, Dor Shefy, Eve Toulza, Olivier Rey, et al.. Frontloading of stress response genes enhances robustness to environmental change in chimeric corals. Forum du Labex TULIP, Labex TULIP, Nov 2022, Toulouse, France. ⟨10.1186/s12915-022-01371-7⟩. ⟨hal-03969974⟩
  • Alejandro Valdivieso, Lionel Dégremont, Guillaume Mitta, E. Mege, Janan Gawra, et al.. DNA methylation changes associated to Pacific Oyster Mortality Syndrome in Crassostrea gigas. EPIMAR 2022, Oct 2022, Woods Hole, Massachussets, United States. ⟨hal-03965103⟩
  • Jeremie Vidal-Dupiol, Janan Gawra, Julien de Lorgeril, Yannick Gueguen, Fabrice Roux, et al.. Determinants and relative weight of genetic and epigenetic variation in the resistance of the oyster Crassostrea gigas to the Pacific Oyster Mortality Syndrome. EPIMAR 2022, Oct 2022, Woods Hole (MA), United States. ⟨hal-03965076⟩
  • Luc Dantan, Eve Toulza, Yannick Gueguen, Lionel Dégremont, Benjamin Morga, et al.. Protective effect of bacteria isolated from the natural microbiota of the Pacific oyster Crassostrea gigas against OsHV-1 µvar and Vibrio aestuarianus infections. Joint Meeting ISS 10 & Holobionts 3, International Society of Symbiosis; Holobionts Conference, Jul 2022, Lyon, France. ⟨hal-03971568⟩
  • Jeremie Vidal-Dupiol, Celine Cosseau. GEM/GESTINOV : génétique et épigénétique de la résistance au syndrôme de mortalités massives des juvéniles d’huîtres creuses Crassostrea gigas, gestion durable et innovante des mortalités. Table ronde Recherche-Conchyliculture IFREMER, Thème Santé « Quelles solutions face aux pathogènes détectés dans l’environnement ? », IFREMER, May 2022, Mèze, France. ⟨hal-03991030⟩
  • Pierre‐louis Stenger, Chin-Long Ky, Céline Reisser, S E Planes, Jeremie Vidal-Dupiol. Deciphering shell color pigmentation pathways in the pearl oyster Pinctada margaritifera (Linnaeus 1758) through whole transcriptome sequencing and fine gene expression tuning. World Congress of Malacology, Aug 2019, Pacific Grove, CA, United States. ⟨hal-03965630⟩
  • Céline Reisser, Jeremie Vidal-Dupiol, Jérémy Le Luyer, S E Planes, Chin-Long Ky. Genome assembly of the pearl oyster Pinctada margaritifera : a tool for environmental and evolutionary research. World Congress of Malacology, Aug 2019, Pacific Grove, CA, United States. ⟨hal-03965615⟩
  • Vaihiti Teaniniuraitemoana, Céline Reisser, Jeremie Vidal-Dupiol, Gilles Le Moullac. Genomic factors involved in sex determination and differentiation in a protandrous hermaphrodite bivalve, the pearl oyster Pinctada margaritifera. World Congress of Malacology, Aug 2019, Pacific Grove, CA, United States. ⟨hal-03965197⟩
  • Maxime Lafont, Bruno Petton, Julien de Lorgeril, Agnes Vergnes, Jeremie Vidal-Dupiol, et al.. Efficient and long-lasting protection against the pacific oyster mortality syndrome through antiviral immune priming. 3rd Conference of the International Society of Fish & Shellfish Immunology (ISFSI), Jun 2019, Las Palmas, Spain. pp.461-461, ⟨10.1016/j.fsi.2019.04.262⟩. ⟨hal-02350814⟩
  • Jeremie Vidal-Dupiol. Epigenetic change mediate rapid adaptatioin to global warming in coral. Forum du labex TULIP, Labex TULIP, May 2019, Montjoie, France. ⟨hal-03971651⟩
  • Guillaume Mitta, Julien de Lorgeril, Aude Lucasson, Bruno Petton, Eve Toulza, et al.. Cracking the code of Pacific oyster mortality syndrom. Aqua 2018 14th International Symposium on Aquaculture Nutrition, Aug 2018, Montpellier, France. ⟨hal-03965691⟩
  • C. Montagnani, Maxime Lafont, Bruno Petton, Julien de Lorgeril, Manon Fallet, et al.. How to strain your oyster? A story of immune shaping and priming in the pacific oyster, Crassostrea gigas. Aqua 2018 14th International Symposium on Aquaculture Nutrition, Aug 2018, Montpellier, France. ⟨hal-03965651⟩
  • Julien de Lorgeril, Aude Lucasson, Bruno Petton, Eve Toulza, Philippe Haffner, et al.. An integrative approach to decipher the summer mortality syndrome affecting Pacific oysters. Immuninv 2017, Jun 2017, Lyon, France. ⟨hal-03966171⟩
  • Julien de Lorgeril, Aude Lucasson, Bruno Petton, Eve R Toulza, Philippe Haffner, et al.. An integrative approach to decipher the mortality syndrome affecting juvenile Pacific oysters. International Conference on Holobionts, Apr 2017, Paris, France. ⟨hal-03965715⟩
  • Kelly Brener, Marine Pratlong, Jérémie Vidal-Dupiol, Mehdi Adjeroud, Pascal Romans, et al.. Coral plasticity and holobiont dynamics under thermal stress: intrapopulational, interpopulational and interspecific variability. 13th International Coral Reef Symposium, Jun 2016, Honolulu, United States. pp.38-39. ⟨hal-03965848⟩
  • Jeremie Vidal-Dupiol, Eve R Toulza, Christoph Grunau, Cristian Chaparro, David R Roquis, et al.. Recurrent bleaching inducing thermotolerance increases: a dive into the holobiont adaptability through (meta)genomic and epigenomic mechanisms. 13th International Coral Reef Symposium, Jun 2016, Honolulu, United States. pp.357. ⟨hal-03965822⟩
  • Gilles Le Moullac, Claude Soyez, Jeremie Vidal-Dupiol, Oihana Latchère, C. Belliard, et al.. High pCO2 and warming are threats for the pearl oyster Pinctada margaritifera and the pearl farming. 13th International Coral Reefs Symposium, Jun 2016, Honolulu, United States. pp.191. ⟨hal-03965793⟩
  • Jeremie Vidal-Dupiol, Erwan Harscouet, Dor Shefy, Eve Toulza, Olivier Rey, et al.. Coral chimeras: when a loose of transcriptomic plasticity increase robustness. 14th International Coral Reef Symposium (14th ICRS), Jun 2016, Bremen (GERMANY), Germany. ⟨hal-03965148⟩
  • David Roquis, Jeremie Vidal-Dupiol, Céline Cosseau, G. Mitta, Christoph Grunau. Possible epigenetic origin of thermal stress adaptation of the tropical coral Pocillopora damicornis. Colloque CNRS Epigénétique en Ecologie et Evolution, Réseau Thématique Pluridisciplinaire Epigénétique en Ecologie et Evolution CNRS, Dec 2013, Gif-sur-Yvette, France. ⟨hal-03968975⟩
  • D. Aurelle, Jeremie Vidal-Dupiol, Anne Haguenauer, Christoph Grunau, Didier Forcioli, et al.. The puzzle of cnidarians adaptation: an integrative approach. 14th Congress of the European Society for Evolutionary Biology ESEB, Aug 2013, Lisbonne, Portugal. pp.1330. ⟨hal-03965877⟩
  • Jeremie Vidal-Dupiol, Christoph Grunau, Céline Cosseau, Michael Freitag, Guillaume Mitta. Stratégies et méthodes de RNA-seq appliquées aux questions écologiques sur organismes non modèles. Journée de Conférences: Exploration de la Biodiversité par NGS, de nouveaux horizons ?, May 2013, Marseille, France. ⟨hal-03968980⟩
  • Jeremie Vidal-Dupiol, Ophélie Ladrière, Nolwenn M. Dheilly, Delphine Destoumieux-Garzón, Sylvie Tambutté, et al.. The immune response of Pocillopora damicornis confronted to Vibrio coralliilyticus. 12th International Coral Reefs Symposium ICRS, Jul 2012, Cairns, Australia. pp.396. ⟨hal-03966000⟩
  • Jeremie Vidal-Dupiol, Didier Zoccola, Éric Tambutté, Christoph Grunau, Céline Cosseau, et al.. Global coral transcriptomic responses to ocean acidification. 12th International Coral Reefs Symposium, Jul 2012, Cairns, Australia. pp.396. ⟨hal-03965931⟩
  • Jeremie Vidal-Dupiol, Ophélie Ladrière, Nolwenn M. Dheilly, Delphine Destoumieux-Garzón, Sylvie Tambutté, et al.. The immune response of Pocillopora damicornis confronted to Vibrio coralliilyticus. Immunologie des Invertébrés IMMUNINV 2012, 2012, Perpignan, France. pp.22. ⟨hal-03969008⟩
  • Jeremie Vidal-Dupiol, Ophélie Ladrière, Delphine Destoumieux-Garzón, P.E. Sautière, Anne-Leila Meistertzheim, et al.. Damicornin, the first AMP from a scleractinian coral: characterization and expression disturbance during vibriosis. Journées du Réseau Ecologie des Interactions Durables, Réseau Ecologie des Interactions Durables, 2012, Rennes, France. ⟨hal-03969025⟩
  • Jeremie Vidal-Dupiol, Nolwenn Dheilly, Christoph Grunau, Céline Cosseau, Michael Freitag, et al.. The immune response of Pocillopora damicornis confronted to Vibrio coralliilyticus: a RNA-seq approach. 3e Journée du réseau "Interactions Micro-organismes Hôtes" IMH, Réseau Interactions Micro-organismes Hôtes, Nov 2011, Montpellier, France. ⟨hal-03969030⟩
  • Mehdi Adjeroud, F. Michonneau, P.J. Edmunds, Yannick Chancerelle, Lucie Penin, et al.. Recurrent large-scale disturbances, recovery trajectories, and resilience of coral assemblage on a coral reef in the south-central pacific. 11th Pacific Science Inter-Congress, Mar 2009, Tahiti, French Polynesia. ⟨hal-03966097⟩
  • Lucie Penin, Jeremie Vidal-Dupiol, Mehdi Adjeroud. Bleaching events: are spatial and taxonomic patterns consistent among year? A case study around Moorea, French Polynesia. 11th Pacific Science Inter-Congres, Mar 2009, Tahiti, French Polynesia. pp.200. ⟨hal-03966069⟩
  • Jeremie Vidal-Dupiol, Guillaume Mitta, Emmanuel Roger, Denis Allemand, Christine Ferrier-Pagès, et al.. Potential implication of host/symbiont recognition mechanisms during coral bleaching. Advancing the Science of Limnology and Oceanography ASLO Meeting, Jan 2009, Nice, France. pp.278. ⟨hal-03966045⟩
  • Mehdi Adjeroud, F. Michonneau, P.J. Edmunds, Yannick Chancerelle, Lucie Penin, et al.. Recurrent large-scale disturbances, recovery trajectories, and resilience of coral assemblage on a coral reef in the south-central pacific. 11th International Coral Reefs Symposium ICRS, Jul 2008, Fort Lauderdale, United States. pp.161. ⟨hal-03966116⟩
  • M. Adjeroud, F. Michonneau, P.J. Edmunds, Y. Chancerelle, Lucie Penin, et al.. Recurrent large-scale disturbances, recovery trajectories, and resilience of coral assemblages on a coral reef in the south-central Pacific. 11th International Coral Reef Symposium, Jul 2008, Fort Lauderdale, United States. ⟨halsde-00332281⟩
  • Jeremie Vidal-Dupiol, Michel Pichon. Pocillopora verrucosa and Pocillopora meandrina are distinct species : morphometric evidences (poster). 11th International Coral Reef Symposium, Jul 2008, Fort Lauderdale, United States. ⟨halsde-00329878⟩
  • J. Vidal-Dupiol, G. Mitta, E. Roger, D. Allemand, C. Ferrier-Pagès, et al.. Potential implication of host/symbiont recognition mechanisms in coral bleaching (poster). 11th International Coral Reef Symposium, Jul 2008, Fort Lauderdale, United States. ⟨halsde-00329886⟩

Poster de conférence

  • Luc Dantan, Eve Toulza, Yannick Gueguen, Lionel Dégremont, Benjamin Morga, et al.. Protective effect of bacteria isolated from the natural microbiota of the Pacific oyster Crassostrea gigas against OsHV-1 µvar and Vibrio aestuarianus infections. MicrobiOccitanie 2022, 3e rencontre des laboratoires de microbiologie de la région Occitanie, Jul 2022, Toulouse, France. . ⟨hal-03976718⟩
  • Léo Duperret, Emily Kunzelman, Louis Boismorand, Bruno Petton, Benjamin Morga, et al.. Is microbiota composition correlated to changes of permissiveness in Pacific oyster mortality syndrome?. 6th international symposium on genomics in aquaculture GIA 2022, May 2022, Granada, Spain. . ⟨hal-03971442⟩
  • Luc Dantan, Eve Toulza, Yannick Gueguen, Lionel Dégremont, Benjamin Morga, et al.. Protective effect of bacteria isolated from the natural microbiota of the Pacific oyster Crassostrea gigas against OsHV-1 µvar and Vibrio aestuarianus infections. 6th international symposium on genomics in aquaculture GIA 2022, May 2022, Grenade, Spain. . ⟨hal-03971532⟩
  • Janan Gawra, Jean-Baptiste Lamy, Mathilde Saccas, Julien de Lorgeril, Yannick Gueguen, et al.. Epi(genetic) determinants of resistance in the Pacific oyster Crassostrea gigas: A case study in natural population. 18th EEID Ecology and Evolution of Infectious Diseases Meeting, Jun 2021, Online, France. . ⟨hal-03971618⟩
  • Janan Gawra, J.B. Lamy, Mathilde Saccas, Julien de Lorgeril, Yannick Gueguen, et al.. Integrative approach of the resistance mechanisms to the mass mortality syndrome affecting the juvenile of the oyster Crassostrea gigas (POMS). First Epigenetic In Marine Biology Congress EPIMAR, Oct 2020, Montpellier ( Virtual Conference ), France. . ⟨hal-03969100⟩
  • Manon Fallet, Bruno Petton, Julien de Lorgeril, Sébastien Comarmond, Cristian Chaparro, et al.. Transgenerational response to early microbial exposure in the oyster Crassostrea gigas and positive impact on survival capacities to juvenile mortality syndrome. 5. Journée d'Animation Scientifique du réseau épiPhase, Jun 2019, Toulouse, France. 35 p., 2019, épiPHASE. ⟨hal-02736036⟩
  • Jeremie Vidal-Dupiol, Eve R Toulza, Christoph Grunau, Olivier Rey, David Roquis, et al.. Epigenetic and genetic mechanisms of trained adaptation to global warming in corals. EVOLUTION 2018 - 2nd Joint Congress on Evolutionary Biology, Aug 2018, Montellier, France. . ⟨hal-03969153⟩
  • J. Vidal-Dupiol, Caroline Soyer, G. Le Moullac, L. Chapron, B. Belliaeff, et al.. Impact of temperature and pH predicted for the 22th century on energy metabolisms and shell growth of the giant clam Tridacna maxima. 13th International Coral Reef Symposium, Jun 2016, Honolulu, United States. , 2016. ⟨hal-01629919⟩
  • Jeremie Vidal-Dupiol, Claude Soyez, Gilles Le Moullac, L. Chapron, Benoǐt Beliaeff, et al.. Impact of temperature and pH predicted for the 22th century on energy metabolisms and shell growth of the giant clams Tridacna. 13th International Coral Reefs Symposium ICRS, Jun 2016, Honolulu, United States. . ⟨hal-03969174⟩
  • David Roquis, Ariadna Picart-Picolo, Jeremie Vidal-Dupiol, Celine Cosseau, Christoph Grunau. Roles of epigenetic mechanisms in Dauermodifikations and adaptative evolution. Ecole thématique CNRS "Eco-Evo-Epigen", May 2015, St Pierre d'Oléron, France. ⟨hal-04007854⟩
  • Kelly Brener, Jeremie Vidal-Dupiol, Mehdi Adjeroud, Pascal Romans, Julien Loubet, et al.. Dynamique de l’holobionte corallien et plasticité transcriptomique : variabilité interspécifique, interpopulationnelle et interindividuelle. Journée de doctoriales Aragoyennes, Apr 2014, Banyuls sur Mer, France. ⟨hal-01134460⟩
  • Jeremie Vidal-Dupiol, Ophélie Ladrière, Anne-Leila Meistertzheim, Delphine Destoumieux-Garzon, Éric Tambutté, et al.. Antimicrobial response of the scleractinian coral Pocillopora damicornis to bacterial stress from Vibrio coralliilyticus. 11th European Coral Reefs Symposium, Dec 2010, Wageningen, Netherlands. ⟨hal-03969192⟩
  • J. Vidal-Dupiol, G. Mitta, E. Roger, D. Allemand, C. Ferrier-Pagès, et al.. Potential implication of host/symbiont recognition mechanisms during coral bleaching. 13th France-Japan oceanography symposium, Sep 2008, Marseille, France. ⟨hal-03969202⟩
  • Jeremie Vidal-Dupiol. Le réchauffement climatique sonne-t-il le glas des récifs coralliens ?. Exposition du CNRS Explorateurs des Mers, Jul 2007, Paris, France. ⟨hal-03969948⟩

Pré-publications, Documents de travail

  • Jeremie Vidal-Dupiol, Cristian Chaparro, Marine Pratlong, Pierre Pontarotti, Christoph Grunau, et al.. Sequencing, de novo assembly and annotation of the genome of the scleractinian coral, Pocillopora acuta. 2021. ⟨hal-03239739⟩
  • Chloé Brahmi, Leila Chapron, Gilles Le Moullac, Claude Soyez, Benoît Beliaeff, et al.. Effects of temperature and p CO 2 on the respiration, biomineralization and photophysiology of the giant clam Tridacna maxima. 2021. ⟨hal-03239758⟩
  • David Roquis, Ariadna Picart Picolo, Kelly Brener Raffalli, Pascal Romans, Patrick Masanet, et al.. The tropical coral Pocillopora acuta has a mosaic DNA methylome, an unusual chromatin structure and shows histone H3 clipping. 2021. ⟨hal-03239798⟩
  • Didier Aurelle, Marine Pratlong, Nicolas Oury, Anne Haguenauer, Pauline Gélin, et al.. Population genomics of Pocillopora corals: insights from RAD-sequencing. 2021. ⟨hal-03374944⟩
  • Ronaldo de Carvalho Augusto, Aki Minoda, Oliver Rey, Céline Cosseau, Cristian Chaparro, et al.. Chromatin structure changes in Daphnia populations upon exposure to environmental cues – or – The discovery of Wolterecks “Matrix”. 2020. ⟨hal-02991174⟩

Rapports

  • Céline Lafabrie, Nabila Gaertner-Mazouni, Denis Saulnier, Vivien Hulot, Alain Lo-Yat, et al.. Qualité des milieux de production et santé des cheptels aquatiques en élevage. Projet QUALI-SANT [Rapport final]. [Rapport de recherche] Université de la Polynésie française. 2019, 45 p. ⟨hal-03211662⟩

Thèses

  • Jeremie Vidal-Dupiol. Stress environnementaux chez le corail scléractiniaire Pocillopora damicornis : du modèle expérimental à l'identification de marqueurs fonctionnels du stress.. Sciences du Vivant [q-bio]. Ecole pratique des hautes études - EPHE PARIS, 2011. Français. ⟨NNT : ⟩. ⟨tel-00608572⟩

Habilitations à diriger des recherches

  • Jeremie Vidal-Dupiol. Réponse, acclimatation et adaptation des invertébrés marins aux changements environnementaux biotiques et abiotiques. Biodiversité et Ecologie. Université de Perpignan Via Domitia, 2022. ⟨tel-03682593⟩